pasapipeline github.io

Gene Structure Annotation and Analysis Using PASA

Gene Structure Annotation and Analysis Using PASA. PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments. Running the Alignment Assembly Pipeline.
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LINKS TO PASAPIPELINE.GITHUB.IO

EVidenceModeler EVM

EVM provides a flexible and intuitive framework for combining diverse evidence types into a single automated gene structure annotation system. To fully leverage high quality transcript alignments, you should download and install PASA.

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SITE TITLE

Gene Structure Annotation and Analysis Using PASA

DESCRIPTION

Gene Structure Annotation and Analysis Using PASA. PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments. Running the Alignment Assembly Pipeline.

PARSED CONTENT

The site had the following in the web page, "Gene Structure Annotation and Analysis Using PASA." I observed that the web site stated " PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data." They also stated " PASA also identifies and classifies all splicing variations supported by the transcript alignments. Running the Alignment Assembly Pipeline."

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