A lims system to automate and expedite proteomics data management, processing and analysis. Open-source java library for computational proteomics.

Does NP-completeness have a role to play in Bioinformatics? June 22, 2016. The paper is bogus and the problem is certainly not NP-complete. hybridSPAdes paper, it describes read-to-graph alignment. There is a similar formulation for th.

A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing rese.

Is a coalescent simulator for biological sequences. Different to similar programs, it can approximate the Ancestral Recombination Graph as closely as needed, but still has only linear runtime cost for long sequences. It allows you to rapidly simulate chromosome scale sequences with essentially correct genetic linkage. In R to install it.

MicroRNA Regulation of Cbx7 Mediates a Switch of Polycomb Orthologs during ESC Differentiation.